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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
15 years 2 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
CGF
2005
111views more  CGF 2005»
15 years 1 months ago
Hierarchyless Simplification, Stripification and Compression of Triangulated Two Manifolds
In this paper we explore the algorithmic space in which stripification, simplification and geometric compression of triangulated 2-manifolds overlap. Edge-collase/uncollapse based...
Pablo Diaz-Gutierrez, Meenakshisundaram Gopi, Rena...
PVLDB
2008
126views more  PVLDB 2008»
15 years 1 months ago
Parallelizing query optimization
Many commercial RDBMSs employ cost-based query optimization exploiting dynamic programming (DP) to efficiently generate the optimal query execution plan. However, optimization tim...
Wook-Shin Han, Wooseong Kwak, Jinsoo Lee, Guy M. L...
ANCS
2009
ACM
14 years 11 months ago
Weighted random oblivious routing on torus networks
Torus, mesh, and flattened butterfly networks have all been considered as candidate architectures for on-chip interconnection networks. In this paper, we study the problem of opti...
Rohit Sunkam Ramanujam, Bill Lin
IANDC
2011
148views more  IANDC 2011»
14 years 9 months ago
Building species trees from larger parts of phylogenomic databases
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...
Celine Scornavacca, Vincent Berry, Vincent Ranwez