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» Aligning Alignments
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RECOMB
2010
Springer
15 years 5 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
RECOMB
2008
Springer
16 years 1 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
IPPS
2006
IEEE
15 years 6 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed
109
Voted
NIPS
2007
15 years 2 months ago
HM-BiTAM: Bilingual Topic Exploration, Word Alignment, and Translation
We present a novel paradigm for statistical machine translation (SMT), based on a joint modeling of word alignment and the topical aspects underlying bilingual document-pairs, via...
Bing Zhao, Eric P. Xing
ACL
2006
15 years 2 months ago
Tree-to-String Alignment Template for Statistical Machine Translation
We present a novel translation model based on tree-to-string alignment template (TAT) which describes the alignment between a source parse tree and a target string. A TAT is capab...
Yang Liu, Qun Liu, Shouxun Lin