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103
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STRINGOLOGY
2004
15 years 2 months ago
A Note on Bit-Parallel Alignment Computation
Abstract. The edit distance between strings A and B is defined as the minimum number of edit operations needed in converting A into B or vice versa. Typically the allowed edit oper...
Heikki Hyyrö
ISAAC
2004
Springer
125views Algorithms» more  ISAAC 2004»
15 years 6 months ago
Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
ALMOB
2008
81views more  ALMOB 2008»
15 years 27 days ago
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Background: Sequence-based phylogeny reconstruction is a fundamental task in Bioinformatics. Practically all methods for phylogeny reconstruction are based on multiple alignments....
Holger Wagner, Burkhard Morgenstern, Andreas W. M....
108
Voted
ACL
2006
15 years 2 months ago
BiTAM: Bilingual Topic AdMixture Models for Word Alignment
We propose a novel bilingual topical admixture (BiTAM) formalism for word alignment in statistical machine translation. Under this formalism, the parallel sentence-pairs within a ...
Bing Zhao, Eric P. Xing
87
Voted
CORR
2010
Springer
119views Education» more  CORR 2010»
15 years 25 days ago
Ergodic Secret Alignment
In this paper, we provide a new achievable ergodic secrecy rate region for the multiple access wiretap channel in fading. Our achievable scheme is based on repeating each symbol at...
Raef Bassily, Sennur Ulukus