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SSDBM
2005
IEEE
100views Database» more  SSDBM 2005»
15 years 6 months ago
An Information Theoretic Model for Database Alignment
As with many large organizations, the Government's data is split in many different ways and is collected at different times by different people. The resulting massive data he...
Patrick Pantel, Andrew Philpot, Eduard H. Hovy
101
Voted
CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
15 years 4 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
89
Voted
BMCBI
2007
115views more  BMCBI 2007»
15 years 27 days ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
JCB
2008
106views more  JCB 2008»
15 years 23 days ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
114
Voted
BMCBI
2007
142views more  BMCBI 2007»
15 years 24 days ago
SABERTOOTH: protein structural alignment based on a vectorial structure representation
Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
Florian Teichert, Ugo Bastolla, Markus Porto