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134
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BIBM
2010
IEEE
156views Bioinformatics» more  BIBM 2010»
14 years 10 months ago
Truncation of protein sequences for fast profile alignment with application to subcellular localization
We have recently found that the computation time of homology-based subcellular localization can be substantially reduced by aligning profiles up to the cleavage site positions of s...
Man-Wai Mak, Wei Wang, Sun-Yuan Kung
105
Voted
BMCBI
2006
108views more  BMCBI 2006»
15 years 26 days ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
108
Voted
BMCBI
2005
125views more  BMCBI 2005»
15 years 21 days ago
Multiple sequence alignments of partially coding nucleic acid sequences
Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, ...
Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried,...
111
Voted
FINTAL
2006
15 years 4 months ago
Using Alignment Templates to Infer Shallow-Transfer Machine Translation Rules
When building rule-based machine translation systems, a considerable human effort is needed to code the transfer rules that are able to translate source-language sentences into gra...
Felipe Sánchez-Martínez, Hermann Ney
123
Voted
JCB
2000
101views more  JCB 2000»
15 years 18 days ago
Evaluation Measures of Multiple Sequence Alignments
Multiple sequence alignments (MSAs) are frequently used in the study of families of protein sequences or DNA/RNA sequences. They are a fundamental tool for the understanding of th...
Gaston H. Gonnet, Chantal Korostensky, Steven A. B...