3877 search results - page 136 / 776 » Aligning Alignments |
92
Voted
PLDI
2004
ACM
15 years 6 months ago
2004
ACM
When vectorizing for SIMD architectures that are commonly employed by today’s multimedia extensions, one of the new challenges that arise is the handling of memory alignment. Pr...
125
Voted
BMCBI
2005
15 years 21 days ago
2005
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
108
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BMCBI
2007
15 years 25 days ago
2007
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
123
Voted
BMCBI
2008
15 years 28 days ago
2008
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
114
Voted
JPDC
2007
15 years 21 days ago
2007
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...