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CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
15 years 9 months ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...
ERSA
2006
129views Hardware» more  ERSA 2006»
15 years 7 months ago
Group-Alignment based Accurate Floating-Point Summation on FPGAs
Floating-point summation is one of the most important operations in scientific/numerical computing applications and also a basic subroutine (SUM) in BLAS (Basic Linear Algebra Sub...
Chuan He, Guan Qin, Mi Lu, Wei Zhao
BMCBI
2010
90views more  BMCBI 2010»
15 years 5 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman
BMCBI
2010
156views more  BMCBI 2010»
15 years 5 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
BMCBI
2010
139views more  BMCBI 2010»
15 years 5 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...