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BMCBI
2006
122views more  BMCBI 2006»
14 years 12 months ago
CoSMoS: Conserved Sequence Motif Search in the proteome
Background: With the ever-increasing number of gene sequences in the public databases, generating and analyzing multiple sequence alignments becomes increasingly time consuming. N...
Xiao I. Liu, Neeraj Korde, Ursula Jakob, Lars I. L...
BMCBI
2006
92views more  BMCBI 2006»
14 years 12 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2006
117views more  BMCBI 2006»
14 years 12 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
NAR
2006
119views more  NAR 2006»
14 years 12 months ago
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
Johannes Söding, Michael Remmert, Andreas Bie...
TIP
2008
99views more  TIP 2008»
14 years 11 months ago
Using Spanning Graphs for Efficient Image Registration
We provide a detailed analysis of the use of minimal spanning graphs as an alignment method for registering multimodal images. This yields an efficient graph theoretic algorithm th...
Mert R. Sabuncu, Peter J. Ramadge