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BIOINFORMATICS
2011
14 years 3 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
BMCBI
2011
14 years 3 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
CVPR
2012
IEEE
13 years 2 months ago
Multi-video browsing and summarization
We propose a method for browsing multiple videos with a common theme, such as the result of a search query on a video sharing website, or videos of an event covered by multiple ca...
Kevin Dale, Eli Shechtman, Shai Avidan, Hanspeter ...
RECOMB
2006
Springer
16 years 6 days ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
ICANNGA
2007
Springer
112views Algorithms» more  ICANNGA 2007»
15 years 6 months ago
Multiple Sequence Alignment with Evolutionary-Progressive Method
A new evolutionary-progressive method for Multiple Sequence Alignment problem is proposed. The method efficiently combines flexibility of evolutionary approach with speed and accu...
Pawel Kupis, Jacek Mandziuk