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» Alignment of Non-Overlapping Sequences
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129
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BMCBI
2007
142views more  BMCBI 2007»
15 years 16 days ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
99
Voted
CIS
2004
Springer
15 years 6 months ago
Algorithms for Loosely Constrained Multiple Sequence Alignment
For finding accurate and biologically meaningful multiple sequence alignment, it is required to consider a loosely constrained version of multiple sequence alignment. This paper is...
Bin Song, Fengfeng Zhou, Guoliang Chen
NAR
2007
153views more  NAR 2007»
15 years 1 days ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...
124
Voted
BMCBI
2010
189views more  BMCBI 2010»
15 years 19 days ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
109
Voted
BMCBI
2006
137views more  BMCBI 2006»
15 years 18 days ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan