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» Alignments of RNA Structures
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SPIRE
2005
Springer
15 years 5 months ago
An Edit Distance Between RNA Stem-Loops
We introduce the notion of conservative edit distance and mapping between two RNA stem-loops. We show that unlike the general edit distance between RNA secondary structures, the co...
Valentin Guignon, Cedric Chauve, Sylvie Hamel
BMCBI
2006
91views more  BMCBI 2006»
14 years 12 months ago
In silico identification of putative promoter motifs of White Spot Syndrome Virus
Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...
NAR
2011
258views Computer Vision» more  NAR 2011»
14 years 2 months ago
The RNA modification database, RNAMDB: 2011 update
Since its inception in 1994, The RNA Modification Database (RNAMDB, http://rna-mdb.cas.albany. edu/RNAmods/) has served as a focal point for information pertaining to naturally oc...
William A. Cantara, Pamela F. Crain, Jef Rozenski,...
BMCBI
2010
137views more  BMCBI 2010»
14 years 6 months ago
The ancient history of the structure of ribonuclease P and the early origins of Archaea
Background: Ribonuclease P is an ancient endonuclease that cleaves precursor tRNA and generally consists of a catalytic RNA subunit (RPR) and one or more proteins (RPPs). It repre...
Feng-Jie Sun, Gustavo Caetano-Anollés
NAR
1998
76views more  NAR 1998»
14 years 11 months ago
U-insertion/deletion Edited Sequence Database
Uridine insertion/deletion RNA editing is a posttranscriptional RNA modification occurring in the mitochondria of kinetoplastid protozoa. The U-insertion/ deletion Edited Sequence...
Larry Simpson, Shirley H. Wang, Otavio H. Thiemann...