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» Alternatives to two classic data structures
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BMCBI
2010
243views more  BMCBI 2010»
14 years 9 months ago
Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data
Background: Visualization of DNA microarray data in two or three dimensional spaces is an important exploratory analysis step in order to detect quality issues or to generate new ...
Christoph Bartenhagen, Hans-Ulrich Klein, Christia...
LION
2009
Springer
112views Optimization» more  LION 2009»
15 years 4 months ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi
139
Voted
CORR
1999
Springer
222views Education» more  CORR 1999»
14 years 9 months ago
Analysis of approximate nearest neighbor searching with clustered point sets
Abstract. Nearest neighbor searching is a fundamental computational problem. A set of n data points is given in real d-dimensional space, and the problem is to preprocess these poi...
Songrit Maneewongvatana, David M. Mount
SDM
2007
SIAM
167views Data Mining» more  SDM 2007»
14 years 11 months ago
Bandits for Taxonomies: A Model-based Approach
We consider a novel problem of learning an optimal matching, in an online fashion, between two feature spaces that are organized as taxonomies. We formulate this as a multi-armed ...
Sandeep Pandey, Deepak Agarwal, Deepayan Chakrabar...
84
Voted
RECOMB
2007
Springer
15 years 10 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...