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BMCBI
2006
128views more  BMCBI 2006»
14 years 10 months ago
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches
Background: We study the adaptation of Link Grammar Parser to the biomedical sublanguage with a focus on domain terms not found in a general parser lexicon. Using two biomedical c...
Sampo Pyysalo, Tapio Salakoski, Sophie Aubin, Adel...
BMCBI
2008
97views more  BMCBI 2008»
14 years 10 months ago
A Population Proportion approach for ranking differentially expressed genes
Background: DNA microarrays are used to investigate differences in gene expression between two or more classes of samples. Most currently used approaches compare mean expression l...
Mugdha Gadgil
ICML
2007
IEEE
15 years 10 months ago
Graph clustering with network structure indices
Graph clustering has become ubiquitous in the study of relational data sets. We examine two simple algorithms: a new graphical adaptation of the k-medoids algorithm and the Girvan...
Matthew J. Rattigan, Marc Maier, David Jensen
BMCBI
2004
122views more  BMCBI 2004»
14 years 9 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
CIKM
2008
Springer
14 years 12 months ago
Searching the wikipedia with contextual information
We propose a framework for searching the Wikipedia with contextual information. Our framework extends the typical keyword search, by considering queries of the type q, p , where q...
Antti Ukkonen, Carlos Castillo, Debora Donato, Ari...