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» An Algorithmic Chemistry for Genetic Programming
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SAC
2006
ACM
14 years 11 months ago
Challenges in the compilation of a domain specific language for dynamic programming
Many combinatorial optimization problems in biosequence analysis are solved via dynamic programming. To increase programming productivity and program reliability, a domain specifi...
Robert Giegerich, Peter Steffen
WOB
2004
120views Bioinformatics» more  WOB 2004»
15 years 1 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
RECOMB
2009
Springer
15 years 6 months ago
Pseudo Boolean Programming for Partially Ordered Genomes
Comparing genomes of different species is a crucial problem in comparative genomics. Different measures have been proposed to compare two genomes: number of common intervals, num...
Sébastien Angibaud, Guillaume Fertin, Annel...
DAM
2007
91views more  DAM 2007»
14 years 11 months ago
Integer linear programming approaches for non-unique probe selection
In addition to their prevalent use for analyzing gene expression, DNA microarrays are an efficient tool for biological, medical, and industrial applications because of their abil...
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, M...
PPSN
1998
Springer
15 years 4 months ago
Methods to Evolve Legal Phenotypes
Many optimization problems require the satisfaction of constraints in addition to their objectives. When using an evolutionary algorithm to solve such problems, these constraints c...
Tina Yu, Peter J. Bentley