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» An Analysis of Inference with the Universum
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ISSTA
2012
ACM
13 years 11 days ago
Static detection of brittle parameter typing
To avoid receiving incorrect arguments, a method specifies the expected type of each formal parameter. However, some parameter types are too general and have subtypes that the me...
Michael Pradel, Severin Heiniger, Thomas R. Gross
RECOMB
2008
Springer
15 years 10 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
ISSTA
2009
ACM
15 years 4 months ago
AVA: automated interpretation of dynamically detected anomalies
Dynamic analysis techniques have been extensively adopted to discover causes of observed failures. In particular, anomaly detection techniques can infer behavioral models from obs...
Anton Babenko, Leonardo Mariani, Fabrizio Pastore
BMCBI
2010
118views more  BMCBI 2010»
14 years 10 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...
BMCBI
2010
136views more  BMCBI 2010»
14 years 10 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...