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BMCBI
2007
148views more  BMCBI 2007»
14 years 9 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
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BMCBI
2007
131views more  BMCBI 2007»
14 years 9 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
JAR
2006
236views more  JAR 2006»
14 years 9 months ago
Deciding Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
JGS
2006
113views more  JGS 2006»
14 years 9 months ago
Pattern based map comparisons
Map comparison techniques based on a pixel-by-pixel comparison are useful for many purposes, but fail to reveal important aspects of map similarities and differences. In contrast, ...
Roger White
JSAT
2006
134views more  JSAT 2006»
14 years 9 months ago
Pueblo: A Hybrid Pseudo-Boolean SAT Solver
This paper introduces a new hybrid method for efficiently integrating Pseudo-Boolean (PB) constraints into generic SAT solvers in order to solve PB satisfiability and optimization...
Hossein M. Sheini, Karem A. Sakallah