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» An Analysis of Permutations in Arrays
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BMCBI
2010
163views more  BMCBI 2010»
13 years 1 months ago
RISCI - Repeat Induced Sequence Changes Identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridiza
Background -: The availability of multiple whole genome sequences has facilitated in silico identification of fixed and polymorphic transposable elements (TE). Whereas polymorphic...
Vipin Singh, Rakesh K. Mishra
TC
2010
13 years 1 months ago
Model-Driven System Capacity Planning under Workload Burstiness
In this paper, we define and study a new class of capacity planning models called MAP queueing networks. MAP queueing networks provide the first analytical methodology to describe ...
Giuliano Casale, Ningfang Mi, Evgenia Smirni
BMCBI
2011
12 years 10 months ago
Genotype calling in tetraploid species from bi-allelic marker data using mixture models
Background: Automated genotype calling in tetraploid species was until recently not possible, which hampered genetic analysis. Modern genotyping assays often produce two signals, ...
Roeland E. Voorrips, Gerrit Gort, Ben Vosman
PLDI
2011
ACM
12 years 9 months ago
Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors
MATLAB is an array language, initially popular for rapid prototyping, but is now being increasingly used to develop production code for numerical and scientific applications. Typ...
Ashwin Prasad, Jayvant Anantpur, R. Govindarajan
BMCBI
2010
96views more  BMCBI 2010»
13 years 6 months ago
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
Background: Chromatin immunoprecipitation (ChIP) followed by high-throughput sequencing (ChIP-seq) or ChIP followed by genome tiling array analysis (ChIP-chip) have become standar...
Lihua J. Zhu, Claude Gazin, Nathan D. Lawson, Herv...