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» An Approach for Method Reengineering
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BMCBI
2010
147views more  BMCBI 2010»
15 years 5 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly
BMCBI
2006
155views more  BMCBI 2006»
15 years 4 months ago
A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
Background: Studies of differential expression that use Affymetrix GeneChip arrays are often carried out with a limited number of replicates. Reasons for this include financial co...
Anne-Mette K. Hein, Sylvia Richardson
TMC
2008
107views more  TMC 2008»
15 years 4 months ago
A Mutual Network Synchronization Method for Wireless Ad Hoc and Sensor Networks
Mutual network synchronization is a distributed method in which geographically separated clocks align their times to one another without the need of reference or master clocks. Mut...
Carlos H. Rentel, Thomas Kunz
BMCBI
2010
121views more  BMCBI 2010»
15 years 5 months ago
MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
Background: While multiple alignment is the first step of usual classification schemes for biological sequences, alignment-free methods are being increasingly used as alternatives...
Eduardo Corel, Florian Pitschi, Ivan Laprevotte, G...
BMCBI
2004
144views more  BMCBI 2004»
15 years 4 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...