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IPPS
2010
IEEE
14 years 8 months ago
Structuring the execution of OpenMP applications for multicore architectures
Abstract--The now commonplace multi-core chips have introduced, by design, a deep hierarchy of memory and cache banks within parallel computers as a tradeoff between the user frien...
François Broquedis, Olivier Aumage, Brice G...
BMCBI
2010
190views more  BMCBI 2010»
14 years 10 months ago
APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility
Background: It is well known that most of the binding free energy of protein interaction is contributed by a few key hot spot residues. These residues are crucial for understandin...
Jun-Feng Xia, Xing-Ming Zhao, Jiangning Song, De-S...
BMCBI
2007
131views more  BMCBI 2007»
14 years 10 months ago
Prediction of peptides observable by mass spectrometry applied at the experimental set level
Background: When proteins are subjected to proteolytic digestion and analyzed by mass spectrometry using a method such as 2D LC MS/MS, only a portion of the proteotypic peptides a...
William S. Sanders, Susan M. Bridges, Fiona M. McC...
EUROPAR
2009
Springer
15 years 2 months ago
Capturing and Visualizing Event Flow Graphs of MPI Applications
A high-level understanding of how an application executes and which performance characteristics it exhibits is essential in many areas of high performance computing, such as applic...
Karl Fürlinger, David Skinner
SC
2005
ACM
15 years 3 months ago
Performance-constrained Distributed DVS Scheduling for Scientific Applications on Power-aware Clusters
Left unchecked, the fundamental drive to increase peak performance using tens of thousands of power hungry components will lead to intolerable operating costs and failure rates. H...
Rong Ge, Xizhou Feng, Kirk W. Cameron