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IPPS
2002
IEEE
15 years 2 months ago
Parallel Genehunter: Implementation of a Linkage Analysis Package for Distributed-Memory Architectures
We present a parallel algorithm for performing multipoint linkage analysis of genetic marker data on large family pedigrees. The algorithm effectively distributes both the computa...
Gavin C. Conant, Steve Plimpton, William Old, Andr...
87
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ISMB
1993
14 years 11 months ago
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification
Molecular sequence megaclassification is a technique for automated protein sequence analysis and annotation. Implementation of the method has been limited by the need to store and...
David J. States, Nomi L. Harris, Lawrence Hunter
ESCIENCE
2007
IEEE
15 years 1 months ago
Grid-Enabling an Efficient Algorithm for Demanding Global Optimization Problems in Genetic Analysis
Abstract. We study the implementation on grid systems of an efficient algorithm for demanding global optimization problems. Specifically, we consider problems arising in the geneti...
Mahen Jayawardena, Sverker Holmgren
ICDM
2010
IEEE
216views Data Mining» more  ICDM 2010»
14 years 7 months ago
K-AP: Generating Specified K Clusters by Efficient Affinity Propagation
Abstract--The Affinity Propagation (AP) clustering algorithm proposed by Frey and Dueck (2007) provides an understandable, nearly optimal summary of a data set. However, it suffers...
Xiangliang Zhang, Wei Wang, Kjetil Nørv&ari...
BMCBI
2002
131views more  BMCBI 2002»
14 years 9 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida