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» An Expressive Extension of TLC
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85
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BMCBI
2007
197views more  BMCBI 2007»
14 years 10 months ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
BMCBI
2008
201views more  BMCBI 2008»
14 years 10 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
BMCBI
2006
153views more  BMCBI 2006»
14 years 10 months ago
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
Background: The identification of patterns in biological sequences is a key challenge in genome analysis and in proteomics. Frequently such patterns are complex and highly variabl...
Markus Seiler, Alexander Mehrle, Annemarie Poustka...
87
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CONSTRAINTS
2006
105views more  CONSTRAINTS 2006»
14 years 10 months ago
Symmetry Breaking Constraints for Value Symmetries in Constraint Satisfaction
Constraint satisfaction problems (CSPs) sometimes contain both variable symmetries and value symmetries, causing adverse effects on CSP solvers based on tree search. As a remedy, s...
Y. Law, J. Lee
113
Voted
ENTCS
2007
168views more  ENTCS 2007»
14 years 10 months ago
Bytecode Rewriting in Tom
In this paper, we present a term rewriting based library for manipulating Java bytecode. We define a mapping from bytecode programs to algebraic terms, and we use Tom, an extensi...
Emilie Balland, Pierre-Etienne Moreau, Antoine Rei...