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» An Improved Parallel Thinning Algorithm
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SAC
2009
ACM
15 years 4 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
GCC
2005
Springer
15 years 3 months ago
Coordinated Placement and Replacement for Grid-Based Hierarchical Web Caches
Web caching has been well accepted as a viable method for saving network bandwidth and reducing user access latency. To provide cache sharing on a large scale, hierarchical web cac...
Wenzhong Li, Kun Wu, Xu Ping, Ye Tao, Sanglu Lu, D...
ICCABS
2011
14 years 1 months ago
Towards accelerating molecular modeling via multi-scale approximation on a GPU
—Research efforts to analyze biomolecular properties contribute towards our understanding of biomolecular function. Calculating non-bonded forces (or in our case, electrostatic s...
Mayank Daga, Wu-chun Feng, Thomas Scogland
CW
2002
IEEE
15 years 2 months ago
Function-Based 3D Web Visualization
This paper describes how the web-based visualization can be greatly improved using the function-based shape modeling technique. The improvement is possible because the proposed fu...
Lai Feng Min, Alexei Sourin, Konstantin Levinski
PPOPP
2010
ACM
15 years 7 months ago
Scalable communication protocols for dynamic sparse data exchange
Many large-scale parallel programs follow a bulk synchronous parallel (BSP) structure with distinct computation and communication phases. Although the communication phase in such ...
Torsten Hoefler, Christian Siebert, Andrew Lumsdai...