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GCB
1997
Springer
77views Biometrics» more  GCB 1997»
15 years 1 months ago
Statistics of large scale sequence searching
Motivation: Database search programs such as FASTA, BLAST or a rigorous Smith–Waterman algorithm produce lists of database entries, which are assumed to be related to the query....
Rainer Spang, Martin Vingron
CATS
2008
14 years 11 months ago
On the Efficiency of Pollard's Rho Method for Discrete Logarithms
Pollard's rho method is a randomized algorithm for computing discrete logarithms. It works by defining a pseudo-random sequence and then detecting a match in the sequence. Ma...
Shi Bai, Richard P. Brent
BMCBI
2010
198views more  BMCBI 2010»
14 years 9 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
BMCBI
2007
109views more  BMCBI 2007»
14 years 9 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
81
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ICASSP
2011
IEEE
14 years 1 months ago
Langevin and hessian with fisher approximation stochastic sampling for parameter estimation of structured covariance
We have studied two efficient sampling methods, Langevin and Hessian adapted Metropolis Hastings (MH), applied to a parameter estimation problem of the mathematical model (Lorent...
Cornelia Vacar, Jean-François Giovannelli, ...