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BMCBI
2008
160views more  BMCBI 2008»
14 years 11 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
QEST
2009
IEEE
15 years 6 months ago
Recent Extensions to Traviando
—Traviando is a trace analyzer and visualizer for simulation traces of discrete event dynamic systems. In this paper, we briefly outline recent extensions of Traviando towards a...
Peter Kemper
GECCO
2004
Springer
164views Optimization» more  GECCO 2004»
15 years 5 months ago
Fuzzy Dominance Based Multi-objective GA-Simplex Hybrid Algorithms Applied to Gene Network Models
Hybrid algorithms that combine genetic algorithms with the Nelder-Mead simplex algorithm have been effective in solving certain optimization problems. In this article, we apply a s...
Praveen Koduru, Sanjoy Das, Stephen Welch, Judith ...
BMCBI
2010
114views more  BMCBI 2010»
14 years 11 months ago
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray develop
Background: Microorganisms display vast diversity, and each one has its own set of genes, cell components and metabolic reactions. To assess their huge unexploited metabolic poten...
Sébastien Terrat, Eric Peyretaillade, Olivi...
TSE
1998
129views more  TSE 1998»
14 years 11 months ago
Inferring Declarative Requirements Specifications from Operational Scenarios
—Scenarios are increasingly recognized as an effective means for eliciting, validating, and documenting software requirements. This paper concentrates on the use of scenarios for...
Axel van Lamsweerde, Laurent Willemet