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» An Intelligent System for Comparing Protein Structures
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PAKDD
2009
ACM
233views Data Mining» more  PAKDD 2009»
15 years 4 months ago
A Kernel Framework for Protein Residue Annotation
Abstract. Over the last decade several prediction methods have been developed for determining structural and functional properties of individual protein residues using sequence and...
Huzefa Rangwala, Christopher Kauffman, George Kary...
ATAL
2005
Springer
15 years 1 months ago
Usability of dial-a-ride systems
A case study of usability of dial-a-ride bus systems is reported. We conduct a social simulation to compare efficiencies of the dial-a-ride bus systems, one of possible multiagent...
Itsuki Noda, Masayuki Ohta, Yoichiro Kumada, Kousu...
BMCBI
2005
134views more  BMCBI 2005»
14 years 11 months ago
Systematic feature evaluation for gene name recognition
In task 1A of the BioCreAtIvE evaluation, systems had to be devised that recognize words and phrases forming gene or protein names in natural language sentences. We approach this ...
Jörg Hakenberg, Steffen Bickel, Conrad Plake,...
BMCBI
2008
87views more  BMCBI 2008»
14 years 11 months ago
Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfa
Background: Empirical binding models have previously been investigated for the energetics of protein complexation (G models) and for the influence of mutations on complexation (i....
Salim Bougouffa, Jim Warwicker
BMCBI
2010
147views more  BMCBI 2010»
14 years 11 months ago
Learning biological network using mutual information and conditional independence
Background: Biological networks offer us a new way to investigate the interactions among different components and address the biological system as a whole. In this paper, a revers...
Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean G...