Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
The systems biology community is building increasingly complex models and simulations of cells and other biological entities. This community is beginning to look at alternatives t...
In this paper, we present the most important features of SeSAm, a modeling and simulation platform for multi-agent simulations. Based on a declarative, explicit model representati...
Support for system speci cation in terms of modelling and simulation environments has become a common practice in safety-critical applications. Also, a current trend is the automat...
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...