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BMCBI
2008
115views more  BMCBI 2008»
14 years 11 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
BMCBI
2005
73views more  BMCBI 2005»
14 years 11 months ago
An analysis of extensible modelling for functional genomics data
Background: Several data formats have been developed for large scale biological experiments, using a variety of methodologies. Most data formats contain a mechanism for allowing e...
Andrew R. Jones, Norman W. Paton
BMCBI
2005
132views more  BMCBI 2005»
14 years 11 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...
DSN
2006
IEEE
15 years 5 months ago
BlueGene/L Failure Analysis and Prediction Models
The growing computational and storage needs of several scientific applications mandate the deployment of extreme-scale parallel machines, such as IBM’s BlueGene/L which can acc...
Yinglung Liang, Yanyong Zhang, Anand Sivasubramani...
WCE
2007
15 years 26 days ago
An Approach to Test Aspect-oriented Programs
— Software testing is a perennial problem, consequently it scores scant attention. An inclusion to testing challenges is aspect-oriented paradigm, which has a dichotomy of core a...
M. N. Qamar, Aziz Nadeem, R. Aziz