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» An application of almost increasing sequences
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92
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BMCBI
2006
134views more  BMCBI 2006»
15 years 16 days ago
Application of machine learning in SNP discovery
Background: Single nucleotide polymorphisms (SNP) constitute more than 90% of the genetic variation, and hence can account for most trait differences among individuals in a given ...
Lakshmi K. Matukumalli, John J. Grefenstette, Davi...
BMCBI
2006
172views more  BMCBI 2006»
15 years 16 days ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...
105
Voted
FCCM
2002
IEEE
208views VLSI» more  FCCM 2002»
15 years 5 months ago
The Effects of Datapath Placement and C-Slow Retiming on Three Computational Benchmarks
C-slow retiming (changing a design to support multiple instances of a computation) and datapath-aware placement have long been advocated by members of the FPGA synthesis community...
Nicholas Weaver, John Wawrzynek
BMCBI
2005
78views more  BMCBI 2005»
15 years 11 days ago
PREP-Mt: predictive RNA editor for plant mitochondrial genes
Background: In plants, RNA editing is a process that converts specific cytidines to uridines and uridines to cytidines in transcripts from virtually all mitochondrial protein-codi...
Jeffrey P. Mower
154
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BMCBI
2011
14 years 4 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes