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RECOMB
2004
Springer
16 years 1 months ago
Structured motifs search
In this paper we describe an algorithm for the localization of structured models, i.e. sequences of (simple) motifs and distance constraints. It basically combines standard patter...
Alberto Policriti, Nicola Vitacolonna, Michele Mor...
IRI
2003
IEEE
15 years 6 months ago
An Architectural Pattern For Adaptable Middleware Infrastructure
- Middleware technologies change so rapidly that designers must adapt existing software architectures to incorporate new emerging ones. This paper proposes tectural pattern and gui...
Arturo Sanchez, Jason Mitchell
PPOPP
2010
ACM
15 years 11 months ago
Scalable communication protocols for dynamic sparse data exchange
Many large-scale parallel programs follow a bulk synchronous parallel (BSP) structure with distinct computation and communication phases. Although the communication phase in such ...
Torsten Hoefler, Christian Siebert, Andrew Lumsdai...
ESCIENCE
2006
IEEE
15 years 7 months ago
Communication over a Secured Heterogeneous Grid with the GriddLeS Runtime Environment
Scientific workflows are a powerful programming technique for specifying complex computations using a number of otherwise independent components. When used in a Grid environment, ...
Jagan Kommineni, David Abramson, Jefferson Tan
PDP
2010
IEEE
15 years 6 months ago
hwloc: A Generic Framework for Managing Hardware Affinities in HPC Applications
The increasing numbers of cores, shared caches and memory nodes within machines introduces a complex hardware topology. High-performance computing applications now have to carefull...
François Broquedis, Jérôme Cle...