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BMCBI
2005
112views more  BMCBI 2005»
15 years 4 months ago
Towards precise classification of cancers based on robust gene functional expression profiles
Background: Development of robust and efficient methods for analyzing and interpreting high dimension gene expression profiles continues to be a focus in computational biology. Th...
Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhe...
BMCBI
2005
109views more  BMCBI 2005»
15 years 4 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
BMCBI
2005
306views more  BMCBI 2005»
15 years 4 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
VLSISP
2008
100views more  VLSISP 2008»
15 years 4 months ago
Memory-constrained Block Processing for DSP Software Optimization
Digital signal processing (DSP) applications involve processing long streams of input data. It is important to take into account this form of processing when implementing embedded ...
Ming-Yung Ko, Chung-Ching Shen, Shuvra S. Bhattach...
VLSISP
2008
173views more  VLSISP 2008»
15 years 4 months ago
Fast Bit Gather, Bit Scatter and Bit Permutation Instructions for Commodity Microprocessors
Advanced bit manipulation operations are not efficiently supported by commodity word-oriented microprocessors. Programming tricks are typically devised to shorten the long sequence...
Yedidya Hilewitz, Ruby B. Lee
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