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» An ontology for bioinformatics applications
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BMCBI
2010
175views more  BMCBI 2010»
15 years 1 months ago
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
Background: Many complementary solutions are available for the identifier mapping problem. This creates an opportunity for bioinformatics tool developers. Tools can be made to fle...
Martijn P. van Iersel, Alexander R. Pico, Thomas K...
KDD
2006
ACM
134views Data Mining» more  KDD 2006»
16 years 2 months ago
Is there a grand challenge or X-prize for data mining?
This panel will discuss possible exciting and motivating Grand Challenge problems for Data Mining, focusing on bioinformatics, multimedia mining, link mining, text mining, and web...
Gregory Piatetsky-Shapiro, Robert Grossman, Chaban...
BIBM
2008
IEEE
145views Bioinformatics» more  BIBM 2008»
15 years 8 months ago
Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item Sets
Understanding what are the characteristics of proteinprotein interfaces is at the core of numerous applications. This paper introduces a method in which the proteins are described...
Christine Martin, Antoine Cornuéjols
BIOTECHNO
2008
IEEE
15 years 8 months ago
Exploiting Codon-Triplets Association for Genome Primary Structure Analysis
— The way evolution shapes the arrangement of synonymous codons within open reading frames (ORF) for fine tuning mRNA decoding efficiency is not yet understood. Since the ribosom...
José P. Lousado, Gabriela R. Moura, Manuel ...
BIBE
2003
IEEE
124views Bioinformatics» more  BIBE 2003»
15 years 7 months ago
Prediction of Contact Maps Using Support Vector Machines
Contact map prediction is of great interest for its application in fold recognition and protein 3D structure determination. In this paper we present a contact-map prediction algor...
Ying Zhao, George Karypis