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BMCBI
2010
153views more  BMCBI 2010»
15 years 3 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
151
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BMCBI
2010
108views more  BMCBI 2010»
15 years 3 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
SCFBM
2008
119views more  SCFBM 2008»
15 years 3 months ago
Permutation - based statistical tests for multiple hypotheses
Background: Genomics and proteomics analyses regularly involve the simultaneous test of hundreds of hypotheses, either on numerical or categorical data. To correct for the occurre...
Anyela Camargo, Francisco Azuaje, Haiying Wang, Hu...
BMCBI
2008
166views more  BMCBI 2008»
15 years 2 months ago
QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR
Background: Medium- to large-scale expression profiling using quantitative polymerase chain reaction (qPCR) assays are becoming increasingly important in genomics research. A majo...
Samuel Arvidsson, Miroslaw Kwasniewski, Diego Maur...
KBSE
2010
IEEE
15 years 2 months ago
Solving string constraints lazily
Decision procedures have long been a fixture in program analysis, and reasoning about string constraints is a key element in many program analyses and testing frameworks. Recent ...
Pieter Hooimeijer, Westley Weimer