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NAR
2006
170views more  NAR 2006»
14 years 10 months ago
The UCSC Genome Browser Database: update 2006
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major m...
Angela S. Hinrichs, Donna Karolchik, Robert Baerts...
BMCBI
2007
153views more  BMCBI 2007»
14 years 10 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
BMCBI
2006
166views more  BMCBI 2006»
14 years 10 months ago
bioNMF: a versatile tool for non-negative matrix factorization in biology
Background: In the Bioinformatics field, a great deal of interest has been given to Non-negative matrix factorization technique (NMF), due to its capability of providing new insig...
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Mo...
DEXAW
2003
IEEE
131views Database» more  DEXAW 2003»
15 years 3 months ago
Having a BLAST: Analyzing Gene Sequence Data with BlastQuest
An essential problem for biologists is the processing and evaluation of BLAST results. We advocate the deployment of database technology and describe a userdriven tool, called Bla...
William G. Farmerie, Joachim Hammer, Li Liu, Marku...
BMCBI
2010
134views more  BMCBI 2010»
14 years 10 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...