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BIOINFORMATICS
2011
14 years 1 months ago
ProDy: Protein Dynamics Inferred from Theory and Experiments
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Ahmet Bakan, Lidio M. Meireles, Ivet Bahar
FGR
2011
IEEE
247views Biometrics» more  FGR 2011»
14 years 1 months ago
Segment and recognize expression phase by fusion of motion area and neutral divergence features
—An expression can be approximated by a sequence of temporal segments called neutral, onset, offset and apex. However, it is not easy to accurately detect such temporal segments ...
Shizhi Chen, YingLi Tian, Qingshan Liu, Dimitris N...
AMOST
2007
ACM
15 years 1 months ago
Achieving both model and code coverage with automated gray-box testing
We have devised a novel technique to automatically generate test cases for a software system, combining black-box model-based testing with white-box parameterized unit testing. Th...
Nicolas Kicillof, Wolfgang Grieskamp, Nikolai Till...
BMCBI
2008
96views more  BMCBI 2008»
14 years 10 months ago
A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information
Background: The zebrafish is a powerful model vertebrate amenable to high throughput in vivo genetic analyses. Examples include reverse genetic screens using morpholino knockdown,...
Michelle N. Knowlton, Tongbin Li, Yongliang Ren, B...
BMCBI
2006
130views more  BMCBI 2006»
14 years 9 months ago
CARMA: A platform for analyzing microarray datasets that incorporate replicate measures
Background: The incorporation of statistical models that account for experimental variability provides a necessary framework for the interpretation of microarray data. A robust ex...
Kevin A. Greer, Matthew R. McReynolds, Heddwen L. ...