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» Analysis and design of sequencing rules for car sequencing
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BMCBI
2008
75views more  BMCBI 2008»
14 years 9 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...
BMCBI
2007
129views more  BMCBI 2007»
14 years 9 months ago
A novel approach to sequence validating protein expression clones with automated decision making
Background: Whereas the molecular assembly of protein expression clones is readily automated and routinely accomplished in high throughput, sequence verification of these clones i...
Elena Taycher, Andreas Rolfs, Yanhui Hu, Dongmei Z...
BMCBI
2007
139views more  BMCBI 2007»
14 years 9 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
ISSS
2002
IEEE
144views Hardware» more  ISSS 2002»
15 years 2 months ago
A Visual Approach to Validating System Level Designs
This paper proposes a simulation-based methodology for validation of a system under design in an early phase of development. The key element of this approach is the visual speciï¬...
Jürgen Ruf, Thomas Kropf, Jochen Klose
BMCBI
2010
147views more  BMCBI 2010»
14 years 9 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly