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BMCBI
2005
132views more  BMCBI 2005»
15 years 1 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
RC
2007
148views more  RC 2007»
15 years 1 months ago
Computing Population Variance and Entropy under Interval Uncertainty: Linear-Time Algorithms
In statistical analysis of measurement results, it is often necessary to compute the range [V , V ] of the population variance V = 1 n · n i=1 (xi −E)2 (where E = 1 n · n i=1 ...
Gang Xiang, Martine Ceberio, Vladik Kreinovich
ICDIM
2008
IEEE
15 years 8 months ago
Population-variance and explorative power of Harmony Search: An analysis
This paper presents a simple mathematical analysis of some features of the Harmony Search algorithm (HS). HS is a recently developed derivative-free optimization algorithm, which ...
Arpan Mukhopadhyay, Anwit Roy, Sourav Das, Swagata...
BMCBI
2007
128views more  BMCBI 2007»
15 years 1 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
ICCAD
2004
IEEE
180views Hardware» more  ICCAD 2004»
15 years 10 months ago
Physical placement driven by sequential timing analysis
Traditional timing-driven placement considers only combinational delays and does not take into account the potential of subsequent sequential optimization steps. As a result, the ...
Aaron P. Hurst, Philip Chong, Andreas Kuehlmann