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» Analysis of Variance for Gene Expression Microarray Data
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BMCBI
2007
147views more  BMCBI 2007»
14 years 10 months ago
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
Background: Cis-acting transcriptional regulatory elements in mammalian genomes typically contain specific combinations of binding sites for various transcription factors. Althoug...
Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, ...
BMCBI
2010
129views more  BMCBI 2010»
14 years 10 months ago
Geoseq: a tool for dissecting deep-sequencing datasets
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...
BMCBI
2007
147views more  BMCBI 2007»
14 years 10 months ago
Statistical significance of quantitative PCR
Background: PCR has the potential to detect and precisely quantify specific DNA sequences, but it is not yet often used as a fully quantitative method. A number of data collection...
Yann Karlen, Alan McNair, Sébastien Persegu...
EDBT
2011
ACM
199views Database» more  EDBT 2011»
14 years 1 months ago
Finding closed frequent item sets by intersecting transactions
Most known frequent item set mining algorithms work by enumerating candidate item sets and pruning infrequent candidates. An alternative method, which works by intersecting transa...
Christian Borgelt, Xiaoyuan Yang, Rubén Nog...
BMCBI
2005
94views more  BMCBI 2005»
14 years 9 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...