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» Analysis of Variance for Gene Expression Microarray Data
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BMCBI
2004
131views more  BMCBI 2004»
15 years 4 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
BIBE
2007
IEEE
191views Bioinformatics» more  BIBE 2007»
15 years 11 months ago
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays
Abstract. Currently, the method most used for gene detection calls on Affymetrix oligonucleotide arrays is provided as part of the MAS5.0 software. The MAS method uses Wilcoxon sta...
Peter Warren, Deanne Taylor, Paolo G. V. Martini, ...
BMCBI
2007
167views more  BMCBI 2007»
15 years 5 months ago
A stochastic differential equation model for transcriptional regulatory networks
Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Adriana Climescu-Haulica, Michelle D. Quirk
CIKM
2004
Springer
15 years 10 months ago
Mining gene expression datasets using density-based clustering
Given the recent advancement of microarray technologies, we present a density-based clustering approach for the purpose of co-expressed gene cluster identification. The underlyin...
Seokkyung Chung, Jongeun Jun, Dennis McLeod
GECCO
2003
Springer
141views Optimization» more  GECCO 2003»
15 years 10 months ago
Finding the Optimal Gene Order in Displaying Microarray Data
The rapid advances of genome-scale sequencing have brought out the necessity of developing new data processing techniques for enormous genomic data. Microarrays, for example, can g...
Seung-Kyu Lee, Yong-Hyuk Kim, Byung Ro Moon