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HPDC
2010
IEEE
13 years 7 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
BMCBI
2005
122views more  BMCBI 2005»
13 years 6 months ago
FACT - a framework for the functional interpretation of high-throughput experiments
Background: Interpreting the results of high-throughput experiments, such as those obtained from DNA-microarrays, is an often time-consuming task due to the high number of data-po...
Felix Kokocinski, Nicolas Delhomme, Gunnar Wrobel,...
PODC
2009
ACM
14 years 6 months ago
Load balancing without regret in the bulletin board model
We analyze the performance of protocols for load balancing in distributed systems based on no-regret algorithms from online learning theory. These protocols treat load balancing a...
Éva Tardos, Georgios Piliouras, Robert D. K...
BMCBI
2010
116views more  BMCBI 2010»
13 years 6 months ago
permGPU: Using graphics processing units in RNA microarray association studies
Background: Many analyses of microarray association studies involve permutation, bootstrap resampling and crossvalidation, that are ideally formulated as embarrassingly parallel c...
Ivo D. Shterev, Sin-Ho Jung, Stephen L. George, Ko...
AINA
2009
IEEE
14 years 1 months ago
Predictive Simulation of HPC Applications
The architectures which support modern supercomputing machinery are as diverse today, as at any point during the last twenty years. The variety of processor core arrangements, thr...
Simon D. Hammond, J. A. Smith, Gihan R. Mudalige, ...