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    » Analysis of variance components in gene expression data
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    BMCBI
    2010
    100views more  BMCBI 2010»
    Trimming of mammalian transcriptional networks using network component analysis
    14 years 9 months ago
    Trimming of mammalian transcriptional networks using network component analysis
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    Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
    Linh M. Tran, Daniel R. Hyduke, James C. Liao
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    BMCBI
    2010
    129views more  BMCBI 2010»
    A temporal precedence based clustering method for gene expression microarray data
    14 years 9 months ago
    A temporal precedence based clustering method for gene expression microarray data
    Download  www.dcs.warwick.ac.uk
    Background: Time-course microarray experiments can produce useful data which can help in understanding the underlying dynamics of the system. Clustering is an important stage in m...
    Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Woll...
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    BMCBI
    2006
    102views more  BMCBI 2006»
    Microarray analysis distinguishes differential gene expression patterns from large and small colony Thymidine kinase mutants of
    14 years 9 months ago
    Microarray analysis distinguishes differential gene expression patterns from large and small colony Thymidine kinase mutants of
    Download  www.biomedcentral.com
    Background: The Thymidine kinase (Tk) mutants generated from the widely used L5178Y mouse lymphoma assay fall into two categories, small colony and large colony. Cells from the la...
    Tao Han, Jianyong Wang, Weida Tong, Martha M. Moor...
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    AIME
    2007
    Springer
    136views Artificial Intelligence» more  AIME 2007»
    Interpreting Gene Expression Data by Searching for Enriched Gene Sets
    15 years 3 months ago
    Interpreting Gene Expression Data by Searching for Enriched Gene Sets
    Download  www-ai.ijs.si
    This paper presents a novel method integrating gene-gene interaction information and Gene Ontology for the construction of new gene sets that are potentially enriched. Enrichment o...
    Igor Trajkovski, Nada Lavrac
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    BMCBI
    2005
    124views more  BMCBI 2005»
    ErmineJ: Tool for functional analysis of gene expression data sets
    14 years 9 months ago
    ErmineJ: Tool for functional analysis of gene expression data sets
    Download  www.cs.utexas.edu
    Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
    Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
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