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» Analyzing Large Spreadsheet Programs
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91
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NAR
2008
125views more  NAR 2008»
14 years 9 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
SAC
2009
ACM
15 years 4 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
84
Voted
SIGSOFT
2004
ACM
15 years 2 months ago
Correlation exploitation in error ranking
Static program checking tools can find many serious bugs in software, but due to analysis limitations they also frequently emit false error reports. Such false positives can easi...
Ted Kremenek, Ken Ashcraft, Junfeng Yang, Dawson R...
BMCBI
2008
125views more  BMCBI 2008»
14 years 9 months ago
SNPLims: a data management system for genome wide association studies
Background: Recent progresses in genotyping technologies allow the generation high-density genetic maps using hundreds of thousands of genetic markers for each DNA sample. The ava...
Alessandro Orro, Guia Guffanti, Erika Salvi, Fabio...
BMCBI
2010
153views more  BMCBI 2010»
14 years 9 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...