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SP
2008
IEEE
122views Security Privacy» more  SP 2008»
14 years 10 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
TCOM
2008
128views more  TCOM 2008»
14 years 10 months ago
Cross-Layer Rate and Power Adaptation Strategies for IR-HARQ Systems over Fading Channels with Memory: A SMDP-Based Approach
Abstract--Incremental-redundancy hybrid automatic repeatrequest (IR-HARQ) schemes are proposed in several wireless standards for increased throughput-efficiency and greater reliabi...
Ashok K. Karmokar, Dejan V. Djonin, Vijay K. Bharg...
ASE
2005
124views more  ASE 2005»
14 years 10 months ago
Reuse-Conducive Development Environments
Despite its well-recognized benefits, software reuse has not met its expected success due to technical, cognitive, and social difficulties. We have systematically analyzed the reu...
Yunwen Ye, Gerhard Fischer
BMCBI
2005
132views more  BMCBI 2005»
14 years 10 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
BMCBI
2005
94views more  BMCBI 2005»
14 years 10 months ago
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage
Background: The allele frequencies of single-nucleotide polymorphisms (SNPs) are needed to select an optimal subset of common SNPs for use in association studies. Sequence-based m...
Jianmin Wang, Xiaoqiu Huang