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BMCBI
2010
102views more  BMCBI 2010»
15 years 3 months ago
Missing genes in the annotation of prokaryotic genomes
Background: Protein-coding gene detection in prokaryotic genomes is considered a much simpler problem than in intron-containing eukaryotic genomes. However there have been reports...
Andrew S. Warren, Jeremy S. Archuleta, Wu-chun Fen...
BMCBI
2007
181views more  BMCBI 2007»
15 years 3 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller
OOPSLA
2009
Springer
15 years 10 months ago
Static extraction and conformance analysis of hierarchical runtime architectural structure using annotations
An object diagram makes explicit the object structures that are only implicit in a class diagram. An object diagram may be missing and must extracted from the code. Alternatively,...
Marwan Abi-Antoun, Jonathan Aldrich
BMCBI
2010
208views more  BMCBI 2010»
15 years 3 months ago
Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene
Background: Image analysis is an essential component in many biological experiments that study gene expression, cell cycle progression, and protein localization. A protocol for tr...
Zafer Aydin, John I. Murray, Robert H. Waterston, ...
BMCBI
2007
131views more  BMCBI 2007»
15 years 3 months ago
FUNC: a package for detecting significant associations between gene sets and ontological annotations
Background: Genome-wide expression, sequence and association studies typically yield large sets of gene candidates, which must then be further analysed and interpreted. Informatio...
Kay Prüfer, Bjoern Muetzel, Hong Hai Do, Gunt...