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153
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BIOINFORMATICS
2006
101views more  BIOINFORMATICS 2006»
15 years 5 months ago
A lock-and-key model for protein-protein interactions
Motivation: Protein-protein interaction networks are one of the major post-genomic data sources available to molecular biologists. They provide a comprehensive view of the global ...
Julie L. Morrison, Rainer Breitling, Desmond J. Hi...
181
Voted
BMCBI
2006
172views more  BMCBI 2006»
15 years 5 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
BMCBI
2006
106views more  BMCBI 2006»
15 years 5 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
177
Voted
IPAW
2010
15 years 3 months ago
Reflections on Provenance Ontology Encodings
As more data (especially scientific data) is digitized and put on the Web, the importance of tracking and sharing its provenance metadata grows. Besides capturing the annotation pr...
Li Ding, Jie Bao, James Michaelis, Jun Zhao, Debor...
ICWSM
2009
15 years 3 months ago
Gephi: An Open Source Software for Exploring and Manipulating Networks
Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and ...
Mathieu Bastian, Sebastien Heymann, Mathieu Jacomy