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WSC
1998
15 years 5 months ago
Parallel Implementation of a Molecular Dynamics Simulation Program
We have taken a NIST molecular dynamics simulation program (md3), which was configured as a single sequential process running on a CRAY C90 vector supercomputer, and parallelized ...
Alan Mink, Christophe Bailly
BMCBI
2010
116views more  BMCBI 2010»
15 years 4 months ago
A hybrid approach to protein folding problem integrating constraint programming with local search
Background: The protein folding problem remains one of the most challenging open problems in computational biology. Simplified models in terms of lattice structure and energy func...
Abu Zafer M. Dayem Ullah, Kathleen Steinhöfel
MICRO
2006
IEEE
191views Hardware» more  MICRO 2006»
15 years 4 months ago
CAPSULE: Hardware-Assisted Parallel Execution of Component-Based Programs
Since processor performance scalability will now mostly be achieved through thread-level parallelism, there is a strong incentive to parallelize a broad range of applications, inc...
Pierre Palatin, Yves Lhuillier, Olivier Temam
PASTE
2004
ACM
15 years 9 months ago
Resolving and applying constraint queries on context-sensitive analyses
A context-sensitive analysis is an analysis in which program elements are assigned sets of properties that depend upon the context in which they occur. For analyses on imperative ...
James Ezick
SIGSOFT
2006
ACM
16 years 4 months ago
Dynamic slicing long running programs through execution fast forwarding
Fixing runtime bugs in long running programs using trace based analyses such as dynamic slicing was believed to be prohibitively expensive. In this paper, we present a novel execu...
Xiangyu Zhang, Sriraman Tallam, Rajiv Gupta