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BMCBI
2010
110views more  BMCBI 2010»
15 years 6 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
BMCBI
2006
100views more  BMCBI 2006»
15 years 6 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
ICFP
2005
ACM
16 years 6 months ago
An expressive language of signatures
Current languages allow a programmer to describe an interface only by enumerating its parts, possibly including other interfaces wholesale. Such languages cannot express relations...
Norman Ramsey, Kathleen Fisher, Paul Govereau
CGO
2006
IEEE
16 years 12 days ago
Fast and Effective Orchestration of Compiler Optimizations for Automatic Performance Tuning
Although compile-time optimizations generally improve program performance, degradations caused by individual techniques are to be expected. One promising research direction to ove...
Zhelong Pan, Rudolf Eigenmann
PPOPP
2005
ACM
15 years 12 months ago
A linear-time algorithm for optimal barrier placement
We want to perform compile-time analysis of an SPMD program and place barriers in it to synchronize it correctly, minimizing the runtime cost of the synchronization. This is the b...
Alain Darte, Robert Schreiber