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TCBB
2011
14 years 9 months ago
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
A TOPS diagram is a simplified description of the topology of a protein using a graph where nodes are α-helices and β-strands, and edges correspond to chirality relations and p...
J. Rocha
JCPHY
2011
192views more  JCPHY 2011»
14 years 5 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
144
Voted
BMCBI
2008
133views more  BMCBI 2008»
15 years 2 months ago
A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data
Background: Microarray techniques are one of the main methods used to investigate thousands of gene expression profiles for enlightening complex biological processes responsible f...
Luca Corradi, Marco Fato, Ivan Porro, Silvia Scagl...
CCGRID
2009
IEEE
15 years 9 months ago
BLAST Application with Data-Aware Desktop Grid Middleware
—There exists numerous Grid middleware to develop and execute programs on the computational Grid, but they still require intensive work from their users. BitDew is made to facili...
Haiwu He, Gilles Fedak, Bing Tang, Franck Cappello
ASMTA
2009
Springer
114views Mathematics» more  ASMTA 2009»
15 years 6 months ago
Improving the Efficiency of the Proxel Method by Using Individual Time Steps
Discrete stochastic models (DSM) are widely used in various application fields today. Proxel-based simulation can outperform discrete event-based approaches in the analysis of smal...
Claudia Krull, Robert Buchholz, Graham Horton