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ICCS
2001
Springer
15 years 6 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
AISC
1998
Springer
15 years 5 months ago
Reasoning About Coding Theory: The Benefits We Get from Computer Algebra
The use of computer algebra is usually considered beneficial for mechanised reasoning in mathematical domains. We present a case study, in the application domain of coding theory, ...
Clemens Ballarin, Lawrence C. Paulson
ANCS
2007
ACM
15 years 5 months ago
Ruler: high-speed packet matching and rewriting on NPUs
Programming specialized network processors (NPU) is inherently difficult. Unlike mainstream processors where architectural features such as out-of-order execution and caches hide ...
Tomas Hruby, Kees van Reeuwijk, Herbert Bos
SSR
2001
73views more  SSR 2001»
15 years 2 months ago
XML implementation of frame processor
A quantitative study has shown that frame technology [1] supported by Fusion toolset can lead to reduction in time-tomarket (70%) and project costs (84%). Frame technology has bee...
Tak Wong, Stan Jarzabek, Soe Myat Swe, Ru Shen, Ho...
BMCBI
2010
108views more  BMCBI 2010»
14 years 11 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden