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BMCBI
2010
127views more  BMCBI 2010»
14 years 10 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
SIGARCH
2008
94views more  SIGARCH 2008»
14 years 10 months ago
Parallelization, performance analysis, and algorithm consideration of Hough transform on chip multiprocessors
This paper presents a parallelization framework for emerging applications on the future chip multiprocessors (CMPs). With the continuing prevalence of CMP and the number of on-die...
Wenlong Li, Yen-Kuang Chen
CIKM
2006
Springer
15 years 2 days ago
Efficiently clustering transactional data with weighted coverage density
In this paper, we propose a fast, memory-efficient, and scalable clustering algorithm for analyzing transactional data. Our approach has three unique features. First, we use the c...
Hua Yan, Keke Chen, Ling Liu
HPCA
2008
IEEE
15 years 10 months ago
Uncovering hidden loop level parallelism in sequential applications
As multicore systems become the dominant mainstream computing technology, one of the most difficult challenges the industry faces is the software. Applications with large amounts ...
Hongtao Zhong, Mojtaba Mehrara, Steven A. Lieberma...
IMC
2006
ACM
15 years 4 months ago
Semi-automated discovery of application session structure
While the problem of analyzing network traffic at the granularity of individual connections has seen considerable previous work and tool development, understanding traffic at a ...
Jayanthkumar Kannan, Jaeyeon Jung, Vern Paxson, Ca...