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138
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GECCO
2007
Springer
196views Optimization» more  GECCO 2007»
15 years 9 months ago
Optimal nesting of species for exact cover of resources: two against many
The application of resource-defined fitness sharing (RFS) to shape nesting problems reveals a remarkable ability to discover tilings [7, 8]. These tilings represent exact covers...
Jeffrey Horn
KES
1999
Springer
15 years 7 months ago
Dynamic Demes parallel genetic algorithm
Abstract—Dynamic Demes is a new method for the parallelisation of evolutionary algorithms. It was derived as a combination of two other parallelisation algorithms: the master-sla...
Mariusz Nowostawski, Riccardo Poli
142
Voted
BMCBI
2005
162views more  BMCBI 2005»
15 years 3 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
121
Voted
BMCBI
2007
120views more  BMCBI 2007»
15 years 3 months ago
Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
Background: When aligning several hundreds or thousands of sequences, such as epidemic virus sequences or homologous/orthologous sequences of some big gene families, to reconstruc...
Arthur Chun-Chieh Shih, D. T. Lee, Chin-Lin Peng, ...
JACM
2006
99views more  JACM 2006»
15 years 3 months ago
Finding a maximum likelihood tree is hard
Abstract. Maximum likelihood (ML) is an increasingly popular optimality criterion for selecting evolutionary trees [Felsenstein 1981]. Finding optimal ML trees appears to be a very...
Benny Chor, Tamir Tuller